Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs1569460 chr6:166794736 A/C 0.00014 488 33.27 32.03 31.42 KM Plot
THCA rs1574529 chr2:238395871 G/A 1.16E-6 497 31.37 35.6 34.1 KM Plot
THCA rs1622955 chr1:5937091 T/C 1.27E-5 496 20.23 29.07 32.82 KM Plot
THCA rs1625706 chr10:7884078 G/A 0.000149 501 31.47 33.07 19.1 KM Plot
THCA rs16838532 chr3:97003026 A/C 8.65E-6 503 37.77 31.77 31.47 KM Plot
THCA rs16838563 chr3:97018479 A/T 6.18E-13 503 31.67 31.43 37.77 KM Plot
THCA rs16838846 chr3:97356400 G/T 6.94E-5 503 34.1 32.27 31.4 KM Plot
THCA rs16910119 chr10:131941109 G/T 1.17E-5 502 31.47 32.9 27.18 KM Plot
THCA rs16910127 chr10:131945050 A/G 1.16E-5 503 31.5 31.83 27.18 KM Plot
THCA rs16910163 chr10:131967640 G/A 1.22E-5 502 31.47 32.37 27.18 KM Plot
THCA rs16910167 chr10:131970613 C/G 1.08E-5 503 31.47 33.3 27.18 KM Plot
THCA rs16921628 chr8:58043928 A/T 4.94E-6 499 31.27 37.83 36.93 KM Plot
THCA rs16921643 chr8:58046444 A/T 4.22E-6 503 31.33 38.17 36.93 KM Plot
THCA rs16921647 chr8:58047046 C/T 3.85E-6 503 36.93 38.77 31.27 KM Plot
THCA rs16967567 chr19:33412182 G/A 5.95E-5 503 31.42 34.82 32.93 KM Plot